Wednesday, June 24, 2020 2pm to 4pm
About this Event
For information on joining the Journal & Coding Club or to subscribe to the listserv, please contact Josh Berlind at berlind@usc.edu. For all other issues or technical help, please contact Nils Lindström (Nils.Lindstrom@med.usc.edu) or Amanda S. Meyer (meyeras@usc.edu).
Wednesday, April 1
11am-noon Recent Advances in the scRNAseq World (Paper), instructor: Nils Lindstrom
2-4pm Intro to Programming in R. What is Programming? R as a Language, instructor: Amanda Meyer
Wednesday, April 8
11am-noon Good Use of Seurat (Paper), instructor: Nils Lindstrom
2-4pm A Detailed Seurat Tutorial, instructor: Nils Lindstrom
Wednesday, April 15
11am-noon Journal club introducing STAR for Alignment (Paper)
2-4pm Intro to Programming in R: Handling Objects, instructor: Amanda Meyer
Wednesday, April 22
11am-noon Cell Ranger Workshop: Alignment of 10xGenomics Data, instructor: Andrew Ransick
Friday, April 24
2-4pm How to Download Data from NCBI, How to Align using STAR, instructor: Sunghyung Kim
Wednesday, April 29
11am-noon Journal club introducing Cut&Run and Cut&Tag (Paper), instructors: Litao Tao and Emily Wang
2-4pm Intro to Programming in R: Notation and Modifying Values, instructor: Amanda Meyer
Wednesday, May 6
11am-noon DESeq workshop, instructors: Sunghyung Kim and Amanda Meyer
2-4pm A Cut&Run analysis, instructors: Litao Tao and Emily Wang
Wednesday, May 13
11am-noon Journal club introducing SnapATAC (Paper)
2-4pm Intro to Programming in R: Programs and Loops, instructor: Amanda Meyer
Wednesday, May 20
11am-12pm Journal club introducing spatial transcriptomics in the gastruloid (Paper)
2-4pm Intro to analysis of snATAC using SnapATAC, instructor: Ted Tseng
Wednesday, May 27
11am-noon Journal club introducing further concepts of spatial transcriptomics (Paper), instructor: Nils Lindstrom
Friday, May 29
2-4pm Intro to Programming in R: S3, S4, S5 Class Objects, instructor: Amanda Meyer
Wednesday, June 3
11-noon Journal club introducing SCENIC for scRNA-seq, instructor: Talon Trecek
Friday, June 12
2-4pm Intro to Programming in R: Data Visualization with Ggplot2, instructor: Amanda Meyer
Wednesday, June 17
11am-1pm SCENIC tutorial: building modules in scRNA-seq, instructor: Talon Trecek
Friday, June 19
2-4pm Basic Python for Velocity, instructor: Litao Tao
Wednesday, June 24
11am-noon Assessing and validating timing (Paper), instructor: Nils Lindstrom
Friday, June 26
2-4pm Intro to Programming in R: Data Transformation, Tidy, and Factors, instructor: Amanda Meyer
Wednesday, July 1
10am-noon Velocity workshop, instructor: Litao Tao
Friday, July 10
2-4pm Intro to Programming in R: Data Transformation, Tidy, and Factors, instructor: Amanda Meyer
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